Introduction

Bigdata2018, IPDPS2017 and IPDPS2016

Introduction
FleCSI is a compile-time configurable framework designed to support
multi-physics application development. As such, FleCSI provides a very

FleCSI Release Notes

Add Legion support for sparse and ragged storage classes
Add MPI support for color and global storage classes
Resolve issues with global
Add tutorial examples, e.g., interop, specialization 
Pass through improved error handling (uniform appraoch -> clog)
Make sure that clog can be disabled (overhead) 
Fix Legion warnings
Improve unit test coverage, clean-up tests

This program was produced under U.S. Government contract 89233218CNA000001 for
Los Alamos National Laboratory (LANL), which is operated by Triad National
Security, LLC for the U.S. Department of Energy/National Nuclear Security
Administration.

All rights in the program are reserved by Triad National Security, LLC, and the
U.S. Department of Energy/National Nuclear Security Administration. The

<!--
Copyright 1998-2019 Lawrence Livermore National Security, LLC and other
HYPRE Project Developers. See the top-level COPYRIGHT file for details.
SPDX-License-Identifier: (Apache-2.0 OR MIT)
-->

HYPRE is a library of high performance
preconditioners and solvers featuring multigrid methods for the solution of
large, sparse linear systems of equations on massively parallel computers.

# Copyright 1998-2019 Lawrence Livermore National Security, LLC and other
# HYPRE Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

#=============================================================================
# This file chronicles user-level changes, beginning with the most recent.
# =============================================================================

                                 Apache License
                           Version 2.0, January 2004
                        http://www.apache.org/licenses/

   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION

   1. Definitions.

      "License" shall mean the terms and conditions for use, reproduction,
      and distribution as defined by Sections 1 through 9 of this document.

Copyright 1998-2019 Lawrence Livermore National Security, LLC and other
HYPRE Project Developers. See the top-level COPYRIGHT file for details.

Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the "Software"),
to deal in the Software without restriction, including without limitation
the rights to use, copy, modify, merge, publish, distribute, sublicense,

Kokkos Kernels
Kokkos C++ Performance Portability Programming EcoSystem: Math Kernels -
Provides BLAS, Sparse BLAS and Graph Kernels 
KokkosKernels implements local computational kernels for linear
algebra and graph operations, using the Kokkos shared-memory parallel
programming model.  "Local" means not using MPI, or running within a

Change Log
3.2.00 (2020-08-19)
Full Changelog
Implemented enhancements:

Add CudaUVMSpace specializations for cuBLAS IAMAX and SCAL #758
Add wiki examples #735

/*
//@HEADER
// ************************************************************************
//
//                        Kokkos v. 3.0
//       Copyright (2020) National Technology & Engineering
//               Solutions of Sandia, LLC (NTESS).
//
// Under the terms of Contract DE-NA0003525 with NTESS,
// the U.S. Government retains certain rights in this software.
//
// KokkosKernels is licensed under 3-clause BSD terms of use:

.. image:: docs/images/libE_logo.png
   :align: center
   :alt: libEnsemble

|

.. image:: https://img.shields.io/pypi/v/libensemble.svg?color=blue
   :target: https://pypi.org/project/libensemble

.. image:: https://travis-ci.org/Libensemble/libensemble.svg?branch=master
   :target: https://travis-ci.org/Libensemble/libensemble

.. image:: https://coveralls.io/repos/github/Libensemble/libensemble/badge.svg?branch=master

=============
Release Notes
=============

Below are the notes from all libEnsemble releases.

Release 0.7.0
-------------

:Date: May 22, 2020

Breaking API changes:

* `Job_controller`/`Job` renamed to `Executor`/`Task` and ``launch`` function to ``submit``. (#285)
* Executors/Resources/Utils moved into sub-packages. ``utils`` now in package ``tools``. (#285)
* sim/gen/alloc support functions moved into ``tools`` sub-package. (#285)

Copyright (c) 2018, UChicago Argonne, LLC

All Rights Reserved
Software Name: LibEnsemble
By: Argonne National Laboratory
OPEN SOURCE LICENSE (BSD)

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

1 Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

===================
MAGMA README FILE
===================

--------------------------------------------------------------------------------
* Quick start (make)

    Create a make.inc file to indicate your C/C++ compiler, Fortran compiler,
    and where CUDA, CPU BLAS, and LAPACK are installed on your system.
    Examples are given in the make.inc-examples directory for various
    libraries and operating systems. The examples rely on paths such as $CUDADIR

             MAGMA Release Notes

-----------------------------------------------------

MAGMA is intended for CUDA enabled NVIDIA GPUs.
It supports Fermi, Kepler, Maxwell, Pascal, Volta, Turing, and Ampere GPUs.

Included are routines for the following algorithms:

    * LU, QR, and Cholesky factorizations
    * Hessenberg, bidiagonal, and tridiagonal reductions
    * Linear solvers based on LU, QR, and Cholesky

  -- Innovative Computing Laboratory
  -- Electrical Engineering and Computer Science Department
  -- University of Tennessee
  -- (C) Copyright 2009-2020

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

  * Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.

                    Finite Element Discretization Library
                                   __
                       _ __ ___   / _|  ___  _ __ ___
                      | '_ ` _ \ | |_  / _ \| '_ ` _ \
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

                               http://mfem.org

MFEM is a modular parallel C++ library for finite element methods. Its goal is

                    Finite Element Discretization Library
                                   __
                       _ __ ___   / _|  ___  _ __ ___
                      | '_ ` _ \ | |_  / _ \| '_ ` _ \
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

                               http://mfem.org

Version 4.1.1 (development)

BSD 3-Clause License

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

README
What is this repository for?
Host the PETSc numerical library package. http://www.mcs.anl.gov/petsc
How do I get set up?

Download http://www.mcs.anl.gov/petsc/download/index.html
Install http://www.mcs.anl.gov/petsc/documentation/installation.html

Contribution guidelines

See the file CONTRIBUTING
https://gitlab.com/petsc/petsc/wikis/Home

Who do I talk to?

Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this

Software for Linear Algebra Targeting Exascale
Innovative Computing Laboratory
University of Tennessee

[TOC]

About
Software for Linear Algebra Targeting Exascale (SLATE) is being developed
as part of the Exascale Computing Project (ECP),

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
    * Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.
    * Redistributions in binary form must reproduce the above copyright

STRUMPACK
STRUMPACK -- STRUctured Matrix PACKage, Copyright (c) 2014-2020, The
Regents of the University of California, through Lawrence Berkeley
National Laboratory (subject to receipt of any required approvals from
the U.S. Dept. of Energy).  All rights reserved.

Documentation & Installation instructions

Version 4.0.0 Released August 17, 2020
======================================
 - The CMake build system has been overhauled completely, now using
   modern CMake.
 - Added a Fortran interface for the sparse solver.
 - Updated C interface to the sparse solver.
 - Improved HODLR, with butterfly, preconditioning. Now relying on
   Butterflypack 1.2.0.
 - Much improved CUDA support in the sparse direct solver. CUDA

"STRUMPACK -- STRUctured Matrices PACKage, Copyright (c) 2019, The Regents of
the University of California, through Lawrence Berkeley National Laboratory
(subject to receipt of any required approvals from the U.S. Dept. of Energy).
All rights reserved."

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic equation Solvers
Version 5.3.0 (May 2020)
Center for Applied Scientific Computing, Lawrence Livermore National Laboratory
SUNDIALS is a family of software packages implemented with the goal of
providing robust time integrators and nonlinear solvers that can easily be
incorporated into existing simulation codes. The primary design goals are to

This work was produced under the auspices of the U.S. Department of
Energy by Lawrence Livermore National Laboratory under Contract
DE-AC52-07NA27344.

This work was prepared as an account of work sponsored by an agency of
the United States Government. Neither the United States Government nor
Lawrence Livermore National Security, LLC, nor any of their employees
makes any warranty, expressed or implied, or assumes any legal liability

BSD 3-Clause License

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

SuperLU_DIST (version 6.3)

Nightly tests
SuperLU_DIST contains a set of subroutines to solve a sparse linear system 
A*X=B. It uses Gaussian elimination with static pivoting (GESP). 
Static pivoting is a technique that combines the numerical stability of

Copyright (c) 2003, The Regents of the University of California, through
Lawrence Berkeley National Laboratory (subject to receipt of any required 
approvals from U.S. Dept. of Energy) 

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met: 

(1) Redistributions of source code must retain the above copyright notice,

Tasmanian
The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a collection of robust libraries for high dimensional integration and interpolation as well as parameter calibration. This documentation focuses on the libraries and the software API, refer to the PDF document on the project web-page for specifics about the mathematics of the implemented methods.
Visit us at: https://tasmanian.ornl.gov/ and

Changelog for version 7.2

removed the XSDK names for options
the XSDK requirement was alleviated due to spack

CMake now builds only one type of library shared or static
matlab interface works well with shared libs thanks to rpaths
magma search is simpler looking for either shared or static libs

Changelog for version 7.1

the Python pip installer can now enable CUDA, MAGMA, MPI, etc.

BSD 3-Clause License

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

Website |
Documentation |
Mailing List |
Packages

The Trilinos project is a collection of open-source packages licensed
individually under multiple open-source licenses. Licensing terms are
available at the Trilinos website:

https://trilinos.github.io/license.html

For information about the software license for a particular package,
see package-specific documentation.

Adelus
Overall Description
This package performs LU factorization with partial pivoting and solves a dense
matrix equation on a distributed computer system using MPI for message passing.
The code was ported from Pliris, which runs on CPUs only. The code uses Kokkos
and Kokkos Kernels libraries to achieve performance portability on heterogeneous
architectures equipped with CPUs and acceleration hardware such as GPUs.

//@HEADER
// ************************************************************************
//
//                        Adelus v. 1.0
//       Copyright (2020) National Technology & Engineering
//               Solutions of Sandia, LLC (NTESS).
//
// Under the terms of Contract DE-NA0003525 with NTESS,
// the U.S. Government retains certain rights in this software.
//
// Adelus is licensed under 3-clause BSD terms of use:

//@HEADER
// ************************************************************************
//
//                        Adelus v. 1.0
//       Copyright (2020) National Technology & Engineering
//               Solutions of Sandia, LLC (NTESS).
//
// Under the terms of Contract DE-NA0003525 with NTESS,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without

Welcome to Amesos, a set of interfaces to third-party direct solvers.

Contents of this README file are:

0) where you should look for Amesos documentation
1) configuring and compiling Amesos
2) testing Amesos
3) directory organization
4) organization of the examples
5) organization and scope of the tests
6) how to submit bugs
7) mailing lists
8) how to cite Amesos
9) copyright notice

------------------------------------------------------------------------------

Jan 11, 2016

MUMPS disabled if no MPI, if wanting to use in serial, see Amesos2

September 23, 2015

CMake has been updated to now use mumps 5.0.0+. This is the defualt.  
The MACRO for -DMUMPS_4_9 or -DMUMPS_5_0 is needed.
This is be made default in future.

August 26, 2008

These cmake scripts worked on octopi.sandia.gov to build the Trilinos
head with MUMPS 4.7.3 and with MUMPS 4.9.  The -DMUMPS_4_9 causes

/*
                           Amesos
                 Copyright (2002) Sandia Corporation

Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
license for use of this work by or on behalf of the U.S. Government.

This library is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation; either version 2.1 of the

                                 Apache License
                           Version 2.0, January 2004
                        http://www.apache.org/licenses/

   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION

   1. Definitions.

      "License" shall mean the terms and conditions for use, reproduction,
      and distribution as defined by Sections 1 through 9 of this document.

HDF5 version 1.13.0 currently under development

------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
------------------------------------------------------------------------------

THE HDF GROUP
---------------

The HDF Group is the developer of HDF5®, a high-performance software library and
data format that has been adopted across multiple industries and has become a

Copyright Notice and License Terms for 
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-----------------------------------------------------------------------------

HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright 2006 by The HDF Group. 

NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright 1998-2006 by The Board of Trustees of the University of Illinois. 

PnetCDF source code development repository
PnetCDF is a parallel I/O library for accessing
Unidata's NetCDF files in
classic formats. The software development is a collaborative work of
Northwestern University and Argonne National Laboratory.

The original repository: https://svn.mcs.anl.gov/repos/parallel-netcdf
Since June 1, 2018, PnetCDF repository has been migrated to

=====================================
PnetCDF Release Notes
=====================================

-------------------------------------
Version _PNETCDF_VERSION_ (_PNETCDF_RELEASE_DATE_)
-------------------------------------

* New/updated utility program
  + A new command-line option `-t` is added to utility program `cdfdiff` to
    compare variable differences within a tolerance. See the man page of

Portions of this software were developed by the Unidata Program at the
University Corporation for Atmospheric Research.

Access and use of this software shall impose the following obligations and
understandings on the user. The user is granted the right, without any fee or
cost, to use, copy, modify, alter, enhance and distribute this software, and

UnifyFS: A Distributed Burst Buffer File System - 0.1.0
Node-local burst buffers are becoming an indispensable hardware resource on
large-scale supercomputers to buffer the bursty I/O from scientific
applications. However, there is a lack of software support for burst buffers to
be efficiently shared by applications within a batch-submitted job and recycled
across different batch jobs. In addition, burst buffers need to cope with a

********************
Copyright (c) 2017, Lawrence Livermore National Security, LLC.
Produced at the Lawrence Livermore National Laboratory.

LLNL-CODE-741539
All rights reserved.

This is the license for UnifyFS. For details, see
https://github.com/LLNL/UnifyFS.

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal

VELOC: VEry-Low Overhead Checkpointing System
VeloC is a multi-level checkpoint/restart runtime that delivers 
high performance and scalability for complex heterogeneous storage 
hierarchies without sacrificing ease of use and flexibility.
It is primarily used as a fault-tolerance tool for tightly coupled
HPC applications running on supercomputing infrastructure but is
essential in many other use cases: suspend-resume, migration, 

MIT License

Copyright (c) 2018, UChicago Argonne, LLC
Copyright (c) 2018, Lawrence Livermore National Security, LLC
All Rights Reserved

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell

Scalable Checkpoint / Restart (SCR) Library
The Scalable Checkpoint / Restart (SCR) library enables MPI applications
to utilize distributed storage on Linux clusters to attain high file I/O
bandwidth for checkpointing and restarting large-scale jobs. With SCR,
jobs run more efficiently, recompute less work upon a failure, and reduce
load on critical shared resources such as the parallel file system.

2012-02-29 Adam Moody <moody20@llnl.gov>

	* scr_util_mpi.c : Added some functions to send/recv strings via MPI.

	* scr_reddesc.c : Step through redundancy descriptor hashes by name
	as determined by rank 0 (no longer need to number CKPTDESC in
	sequential order).

2012-02-08 Adam Moody <moody20@llnl.gov>

	* m4/x_ac_expand_install_dirs.m4 : Fix to address datarootdir variable
	added from autoconf 2.59 to 2.63.

---------------------
Copyright and BSD License
---------------------

Copyright (c) 2009, Lawrence Livermore National Security, LLC.
Produced at the Lawrence Livermore National Laboratory.
Written by Adam Moody <moody20@llnl.gov>.
LLNL-CODE-411039.
All rights reserved.
This file is part of The Scalable Checkpoint / Restart (SCR) library.
For details, see https://github.com/llnl/scr

Redistribution and use in source and binary forms, with or without

SZ: Error-bounded Lossy Compressor for HPC Data
(C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
       See COPYRIGHT in top-level directory.

Major Authors: Sheng Di, Dingwen Tao, Xin Liang 
Supervisor: Franck Cappello 
Other Contributors: Robert Underwood, Sihuan Li, Ali M. Gok, Xiangyu Zou, Wen Xia

Citations
Kindly note: If you mention SZ in your paper, the most appropriate citation is including these three references (Bigdata2018, IPDPS2017 and IPDPS2016), because they cover the whole design and implementation of the latest version of SZ.**

Copyright © 2016 , UChicago Argonne, LLC
All Rights Reserved
[SZ, Version 2.1]
Sheng Di
Dingwen Tao
Xin Liang
Franck Cappello
Argonne National Laboratory

SZ licence is under the BSD license. Details are shown below.

OPEN SOURCE LICENSE (license number: SF-16-105)

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

ZFP

zfp Release Notes
0.5.5 (May 5, 2019)

Added support for reversible (lossless) compression of floating-point and
  integer data.

Added methods for serializing and deserializing zfp's compressed arrays.

Added Python bindings for compressing NumPy arrays.

Added Fortran bindings to zfp's high-level C API.

Change:

The default compressed-array cache size is now a function of the total

BSD 3-Clause License

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

Caliper: A Performance Analysis Toolbox in a Library

Caliper is a program instrumentation and performance measurement
framework. It is a performance analysis toolbox in a library,

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

Darshan is a lightweight I/O characterization tool that transparently
captures I/O access pattern information from HPC applications.
Darshan can be used to tune applications for increased scientific
productivity or to gain insight into trends in large-scale computing
systems.
Please see the 
Darshan web page
for more in-depth news and documentation.

--------------------------
Darshan Release Change Log
--------------------------

Darshan-3.2.1
=============
* fixed bug causing corruption of Darshan common access
  counters (POSIX, MPI-IO, and HDF5 modules) and potentially
  other preceding counters (reported by Gerd Heber)

Darshan-3.2.0
=============
* added detailed instrumentation of HDF5 library file and dataset
  interfaces
* added new logutil functions: darshan_log_get_modules,

				  COPYRIGHT

The following is a notice of limited availability of the code, and disclaimer
which must be included in the prologue of the code and in all source listings
of the code.

Copyright Notice
 + 2015 University of Chicago

Permission is hereby granted to use, reproduce, prepare derivative works, and
to redistribute to others.  This software was authored by:

Mathematics and Computer Science Division

Dyninst
Branch states
| Branch                                  | Status        | Notes                                              |
| --------------------------------------- |:-------------:|:--------------------------------------------------:|
| master                                  | stable        | See below                                          |
| aarch32                                 | experimental  | Contact Ray Chen (rchen at cs dot umd dot edu)     |

Change Log
10.1.0 (2019-07-30)
Full Changelog
Implemented enhancements:

Fix Variable location parsing (781)
Fix proccontrol hangs in test_thread_X (780)
proccontrol: Handle "ghost" threads (742)

              GNU LESSER GENERAL PUBLIC LICENSE
                   Version 2.1, February 1999

Copyright (C) 1991, 1999 Free Software Foundation, Inc.
 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 Everyone is permitted to copy and distribute verbatim copies
 of this license document, but changing it is not allowed.
(This is the first released version of the Lesser GPL.  It also counts

$Id$

=============================================================================
=============================================================================

HPCToolkit/README

As of August 17, 2015, the Rice HPCToolkit repositories (hpctoolkit,
hpcviewer, libmonitor) have moved to GitHub.

https://github.com/HPCToolkit

To clone the hpctoolkit repository:

git clone https://github.com/HPCToolkit/hpctoolkit.git

$Id$

=============================================================================
=============================================================================

HPCToolkit/README.ReleaseNotes

=============================================================================
=============================================================================

Contents:
  0. General Notes
  1. Tool Notes
  2. Revision History

Copyright ((c)) 2002-2020, Rice University
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:

* Redistributions of source code must retain the above copyright
  notice, this list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright

PAPI: The Performance Application Programming Interface
Innovative Computing Laboratory (ICL)
University of Tennessee, Knoxville (UTK)

[TOC]

About
The Performance Application Programming Interface (PAPI) provides tool
designers and application engineers with a consistent interface and methodology
for the use of low-level performance counter hardware found across the entire

This file documents changes in recent PAPI releases in inverse chronological
order.

For details on installing PAPI on your machine, consult the INSTALL.txt file
in this directory.

===============================================================================
PAPI 6.0.0 RELEASE NOTES                                            29 Jan 2020
===============================================================================

                           Copyright (c) 2005 - 2010
                        Innovative Computing Laboratory
               Dept of Electrical Engineering & Computer Science
                            University of Tennessee, 
                                 Knoxville, TN. 
                              All Rights Reserved. 

Redistribution and use in source and binary forms, with or without modification, 

*****************************************************************************
**			TAU Performance System(R)                          **
**			http://tau.uoregon.edu                             **
*****************************************************************************
**    Copyright 1997-2020 				   	           **
**    Department of Computer and Information Science, University of Oregon **
**    Advanced Computing Laboratory, Los Alamos National Laboratory        **

*****************************************************************************
**                      TAU Portable Profiling Package                     **
**                      http://tau.uoregon.edu                             **
*****************************************************************************
**    Copyright 1997-2020						   **
**    Department of Computer and Information Science, University of Oregon **

*****************************************************************************
**			Tuning and Analysis Utilities			   **
**			http://tau.uoregon.edu                             **
*****************************************************************************
**    Copyright 1997-2019						   **
**    Department of Computer and Information Science, University of Oregon **
**    Research Center Juelich, ZAM Germany		  		   **

AML: Building Blocks for Memory Management
=========================================

AML is a library to manage byte-addressable memory devices. The library
is designed as a collection of building blocks, so that users can create custom
memory management policies for allocation and placement of data across devices.

This library is still in the prototyping phase. APIs might break often.

## Documentation

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

    1. Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.

    2. Redistributions in binary form must reproduce the above copyright

BOLT: OpenMP over Lightweight Threads
BOLT targets a high-performing OpenMP implementation, especially specialized
for fine-grain parallelism.  BOLT utilizes a lightweight threading model for
its underlying threading mechanism.  It currently adopts Argobots, a new
holistic, low-level threading and tasking runtime, in order to overcome
shortcomings of conventional OS-level threads.  The current BOLT implementation

===============================================================================
                               Changes in 1.0
===============================================================================

- Upgraded to LLVM OpenMP 10.0
- Upgraded Argobots to 1.0
- Fixed support for untied tasks
- Added tests for OpenMP task and thread scheduling
- Support several platforms including OSX and POWER9.

==============================================================================
BOLT is a derivative of the Intel OpenMP runtime.  The original pieces of the
code from the Intel OpenMP runtime are copyrighted to Intel, and the pieces
modified for BOLT are copyrighted to UChicago Argonne, LLC.
==============================================================================
                   Copyright (c) 2016, UChicago Argonne, LLC

Kokkos: Core Libraries
Kokkos Core implements a programming model in C++ for writing performance portable
applications targeting all major HPC platforms. For that purpose it provides
abstractions for both parallel execution of code and data management.
Kokkos is designed to target complex node architectures with N-level memory

Change Log
3.2.00 (2020-08-19)
Full Changelog
Implemented enhancements:

HIP:Enable stream in HIP #3163
HIP:Add support for shuffle reduction for the HIP backend #3154
HIP:Add implementations of missing HIPHostPinnedSpace methods for LAMMPS #3137

//@HEADER
// ************************************************************************
// 
//                        Kokkos v. 3.0
//       Copyright (2020) National Technology & Engineering
//               Solutions of Sandia, LLC (NTESS).
// 
// Under the terms of Contract DE-NA0003525 with NTESS,
// the U.S. Government retains certain rights in this software.
//
// Kokkos is licensed under 3-clause BSD terms of use:

Copyright (c) 2004-2007 The Trustees of Indiana University and Indiana
                        University Research and Technology
                        Corporation.  All rights reserved.
Copyright (c) 2004-2007 The University of Tennessee and The University
                        of Tennessee Research Foundation.  All rights
                        reserved.
Copyright (c) 2004-2008 High Performance Computing Center Stuttgart,

Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana
                        University Research and Technology
                        Corporation.  All rights reserved.
Copyright (c) 2004-2006 The University of Tennessee and The University
                        of Tennessee Research Foundation.  All rights
                        reserved.
Copyright (c) 2004-2008 High Performance Computing Center Stuttgart,

Most files in this release are marked with the copyrights of the
organizations who have edited them.  The copyrights below are in no
particular order and generally reflect members of the Open MPI core
team who have contributed code to this release.  The copyrights for
code used under license from other parties are included in the
corresponding files.

Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana

Papyrus
Papyrus is a programming system that provides features for scalable, aggregate, persistent memory in an extreme-scale system for typical HPC usage scenarios. Papyrus provides a portable and scalable programming interface to access and manage parallel data structures on the distributed NVM storage.
Requirements

C++11 compiler
MPI library supporting MPI_THREAD_MULTIPLE
CMake (>=3.8)

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright
  notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright

QTHREADS!
The qthreads API is designed to make using large numbers of threads convenient
and easy. The API maps well to both MTA-style threading and PIM-style
threading, and is still quite useful in a standard SMP context. The qthreads
API also provides access to full/empty-bit (FEB) semantics, where every word of

--- 1.16 (anticipated 2020) ---

Documentation:
 - User guide for basic Qthreads usage (see userguide subdirectory for LaTex and included code source files)

--- 1.15 (current) ---

New Features:
 - Add experimental support for Thread Local Storage and new Condition variable initializers
 - Non-blocking FEB functions are now exposed (e.g. qthread_readFF_nb), other runtimes (e.g. MPI) require access.

Copyright 2007 Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software.

* Copyright (c) 2007, Sandia Corporation
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*     * Redistributions of source code must retain the above copyright notice,

The QUO Runtime Library
QUO (as in "status quo") is a runtime library that aids in accommodating
thread-level heterogeneity in dynamic, phased MPI+X applications comprising
single- and multi-threaded libraries.
Releases
Distribution tarballs can be found here.

BSD 3-Clause License

Copyright (c) 2013-2019, Triad National Security, LLC
                         All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

<img src="https://cdn.rawgit.com/LLNL/Umpire/develop/share/umpire/logo/umpire-logo.png" width="128" valign="middle" alt="Umpire"/>  Umpire v3.0.0

Changelog
All notable changes to this project will be documented in this file.
The format is based on Keep a
Changelog, and this project adheres to
Semantic Versioning.
[Develop Branch]
Added

Added ASAN memory sanitization to QuickPool

Added File Memory Allocator

Added alignment option to QuickPool and DynamicPoolList

Copyright (c) 2018, Lawrence Livermore National Security LLC

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is

UPC++: a PGAS library for C++
UPC++ is a parallel programming library for developing
C++ applications with the Partitioned Global Address Space (PGAS) model.
UPC++ has three main objectives:

Provide an object-oriented PGAS programming model in the context of the
  popular C++ language

Expose useful asynchronous parallel programming idioms unavailable in
  traditional SPMD models, such as remote function invocation and

ChangeLog
This is the ChangeLog for public releases of UPC++.
For information on using UPC++, see: README.md  

For information on installing UPC++, see: INSTALL.md
2020.07.17: Bug-fix release 2020.3.2
New features/enhancements:

Shared heap exhaustion in upcxx::new_(array) now throws upcxx::bad_shared_alloc (a type
  derived from std::bad_alloc) which provides additional diagnostics about the failure.

*************************
*** UPC++ LICENSE.txt ***
*************************

All files in this directory and all sub-directories (except where otherwise noted)
are subject to the following copyright and licensing terms.

*** Copyright Notice ***

UPC++ Copyright (c) 2017-2020, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy). All rights reserved.

GOTCHA v1.0.2

Gotcha is a library that wraps functions.  Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc.  

OUR NOTICE AND TERMS AND CONDITIONS OF THE GNU GENERAL PUBLIC LICENSE

Our Preamble Notice

A. This notice is required to be provided under our contract with the U.S.
Department of Energy (DOE). This work was produced at the Lawrence Livermore
National Laboratory under Contract No. DE-AC52-07NA27344 with the DOE.

B. Neither the United States Government nor Lawrence Livermore National Security,
LLC nor any of their employees, makes any warranty, express or implied, or assumes

FAODEL Overview
FAODEL (Flexible, Asynchronous, Object Data-Exchange Libraries) is a 
collection of software libraries that are used to implement 
different data management services on high-performance computing (HPC)
platforms. This project is part of the Advanced Technology Development
and Mitigation (ATDM) effort for NNSA's ASC program at Sandia 
National Laboratories. 
Components

Release Information
This file provides information about different releases of the
faodel tools. Releases are named alphabetically and have a
4-digit ID associated with them that designates the year and month of
the release.
Excelsior! (1.1906.1)

Summary: Job-to-Job improvements via new cli tool
Release Improvements
New faodel-cli tool for manipulating many things

MIT License
Copyright 2018 National Technology & Engineering Solutions of Sandia,
LLC (NTESS). Under the terms of Contract DE-NA0003525 with NTESS, the U.S.
Government retains certain rights in this software.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights

Mercury
[![Build status][travis-ci-svg]][travis-ci-link]
[![Latest version][mercury-release-svg]][mercury-release-link]
Mercury is an RPC framework specifically designed for use in HPC systems
   that allows asynchronous transfer of parameters and execution requests,
   as well as direct support of large data arguments. The network implementation
   is abstracted, allowing easy porting to future systems and efficient use

================
v1.0.1
================
Jerome Soumagne (12):
  2019-02-11 HG: Fix HG_Reset() to reset NA resources upon NA class change (fix #272)
  2019-01-18 HG Util: move inline functions for get/set and export create/destroy
  2019-01-08 Travis: update build script to OFI 1.7.0
  2019-01-07 Travis: update build script to OFI 1.7.0rc3
  2018-12-19 NA SM: remove page size check that would prevent to run on system w pages        larger than 4KB (fix #268)

Copyright (C) 2013-2019, Argonne National Laboratory, Department of Energy,
                   UChicago Argonne, LLC and The HDF Group.
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted for any purpose (including commercial purposes)
provided that the following conditions are met:

1. Redistributions of source code must retain the above copyright notice,

Directory structure
benchmarks
    directory for problems
experiments
    directory for saving the running the experiments and storing the results
search
    directory for source files
Install instructions
====================
With anaconda do the following:
```
conda create --name ytopt -c intel intelpython3_core python=3.6
source activate ytopt
conda install h5py
conda install scikit-learn

Technical Overview |
Installation |
Configuration |
Docker |
Contributing |
License |
Help and Resources
JupyterHub

The Jupyter multi-user notebook server licensing terms
Jupyter multi-user notebook server is licensed under the terms of the Modified BSD License
(also known as New or Revised or 3-Clause BSD), as follows:

Copyright (c) 2014-, Jupyter Development Team

GEOPM - Global Extensible Open Power Manager
============================================

DISCLAIMER
----------
SEE COPYING FILE FOR LICENSE INFORMATION.

LAST UPDATE
-----------
2019 October 29

Christopher Cantalupo <christopher.m.cantalupo@intel.com> <br>

WEB PAGES
---------
https://geopm.github.io <br>
https://geopm.github.io/man/geopm.7.html <br>
https://geopm.slack.com

* Tue Nov 5 2019 Diana Guttman <diana.r.guttman@intel.com> v1.1.0
- Release overview:
- Support for Python 3.6 has been added.
- Support for Python 2.7 continues but will be removed in a future release.
- New features targeting integration with resource managers.
- Enhancements to EnergyEfficientAgent.
- Improved support for automatic OpenMP region detection.
- Support for launching with OpenMPI.

Copyright (c) 2015, 2016, 2017, 2018, 2019, 2020, Intel Corporation

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:

    * Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.

    * Redistributions in binary form must reproduce the above copyright

mpiFileUtils
mpiFileUtils provides both a library called libmfu and a suite of MPI-based tools to manage large datasets, which may vary from large directory trees to large files. High-performance computing users often generate large datasets with parallel applications that run with many processes (millions in some cases). However those users are then stuck with single-process tools like cp and rm to manage their datasets. This suite provides MPI-based tools to handle typical jobs like copy, remove, and compare for such datasets, providing speedups of up to 20-30x.  It also provides a library that simplifies the creation of new tools or can be used in applications.

BSD 3-Clause License

Copyright (c) 2018, Lawrence Livermore National Security, LLC
Copyright (c) 2006-2007,2011-2015, Los Alamos National Security, LLC
Copyright (2013-2015) UT-Battelle, LLC
Copyright (c) 2015, DataDirect Networks, Inc.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

<img src="files/rempi_logo.png" height="60%" width="60%" alt="ReMPI logo" title="ReMPI" align="middle" />
Introduction

ReMPI is a record-and-replay tool for MPI+OpenMP applications written in C/C++ and/or fortra
In a broad sense, "ReMPI" means a record-and-replay tool for MPI+OpenMP applications 

########################################################################
GNU LESSER GENERAL PUBLIC LICENSE (Lesser GPL)
Version 2.1, February 1999
########################################################################
Copyright (c) 2016, Lawrence Livermore National Security, LLC.                     
Produced at the Lawrence Livermore National Laboratory.                            
Written by Kento Sato, kento@llnl.gov. LLNL-CODE-711357.                           

All new contributions must be made under the BSD-3 License
See Developer Wiki

BSD 3-Clause License

Copyright (c) 2000 - 2020, Lawrence Livermore National Security, LLC
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,

This work was produced under the auspices of the U.S. Department of
Energy by Lawrence Livermore National Laboratory under Contract
DE-AC52-07NA27344.

This work was prepared as an account of work sponsored by an agency of
the United States Government. Neither the United States Government nor
Lawrence Livermore National Security, LLC, nor any of their employees
makes any warranty, expressed or implied, or assumes any legal liability

VisIt
Source code repository for the VisIt Scientific Visualization and Data Analysis Application
Project Website | Nightly Test Status
Documentation

Contributing
Contributing to DTK is easy. Just send us a pull request.
When you send your request, make master the destination branch on the
DTK repository.
Your PR must pass DTK's tests. We enforce these guidelines with Jenkins CI.

BSD 3-Clause License

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,

Data Transfer Kit (DTK)

Contributing to ParaView
This page documents at a very high level how to contribute to ParaView.
Please check our [developer instructions][] for a more detailed guide to
developing and contributing to the project, and our [ParaView Git README][]
for additional information.
The ParaView development cycle is built upon the following components:

[Issues][] identify any issues including bugs and feature requests. In

Copyright (c) 2005-2008 Sandia Corporation, Kitware Inc.
Sandia National Laboratories, New Mexico PO Box 5800 Albuquerque, NM 87185
Kitware Inc., 28 Corporate Drive, Clifton Park, NY 12065, USA

Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive license
for use of this work by or on behalf of the U.S. Government.

Redistribution and use in source and binary forms, with or without modification,

Parts of ParaView are under the following licenses:

ParaView License Version 1.2
========================================================================

Sandia National Laboratories, New Mexico
PO Box 5800
Albuquerque, NM 87185

Kitware Inc.
28 Corporate Drive
Clifton Park, NY 12065
USA

Under the terms of Contract DE-AC04-94AL85000, there is a

Introduction
[ParaView][] is an open-source, multi-platform data analysis and
visualization application based on
[Visualization Toolkit (VTK)][VTK].
The first public release was announced in October 2002. Since then, the project
has grown through collaborative efforts between [Kitware Inc.][Kitware],
[Sandia National Laboratories][Sandia],

5.8.1

VTKm License Version 1.4
========================================================================

Under the terms of Contract DE-NA0003525 with NTESS, the U.S. Government
retains certain rights in this software.

VTK-m
VTK-m is a toolkit of scientific visualization algorithms for emerging
processor architectures. VTK-m supports the fine-grained concurrency for
data analysis and visualization algorithms required to drive extreme scale
computing by providing abstract models for data and execution that can be
applied to a variety of algorithms across many different processor
architectures.
You can find out more about the design of VTK-m on the [VTK-m Wiki].

1.5.0

Contributing to VTK-m
This page documents how to develop VTK-m through Git.
Git is an extremely powerful version control tool that supports many
different "workflows" for individual development and collaboration. Here we
document procedures used by the VTK-m development community. In the
interest of simplicity and brevity we do not provide an explanation of
why we use this approach.

E4S Products

Document Summaries

Introduction

FleCSI Release Notes

Document Summaries

Document Summaries

Kokkos Kernels

Change Log

3.2.00 (2020-08-19)

Document Summaries

Document Summaries

Document Summaries

Document Summaries

README

What is this repository for?

How do I get set up?

Contribution guidelines

Who do I talk to?

Document Summaries

About

Document Summaries

STRUMPACK

Documentation & Installation instructions

Document Summaries

SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic equation Solvers

Version 5.3.0 (May 2020)

Document Summaries

SuperLU_DIST (version 6.3)

Document Summaries

Tasmanian

Changelog for version 7.2

Changelog for version 7.1

Document Summaries

Document Summaries

Adelus

Overall Description

Document Summaries

Document Summaries

Document Summaries

Document Summaries

PnetCDF source code development repository

Document Summaries

UnifyFS: A Distributed Burst Buffer File System - 0.1.0

Document Summaries

VELOC: VEry-Low Overhead Checkpointing System

Document Summaries

Scalable Checkpoint / Restart (SCR) Library

Document Summaries

SZ: Error-bounded Lossy Compressor for HPC Data

Citations

Document Summaries

ZFP

zfp Release Notes

0.5.5 (May 5, 2019)

Document Summaries

Caliper: A Performance Analysis Toolbox in a Library

Document Summaries

Document Summaries

Dyninst

Branch states

Change Log

10.1.0 (2019-07-30)

Document Summaries

Document Summaries

About

Document Summaries

Document Summaries

Document Summaries

BOLT: OpenMP over Lightweight Threads

Document Summaries

Kokkos: Core Libraries

Change Log

3.2.00 (2020-08-19)

Document Summaries

Document Summaries

Papyrus

Requirements

Document Summaries

QTHREADS!

Document Summaries